Resolve "Examine and fix new nextcloud setup warnings"

Closes #1116 (closed)

templates/setup-apps-configmap.yaml

@@ -168,6 +168,8 @@ data:
     run_as "php $occ db:add-missing-columns --no-interaction"
     run_as "php $occ db:add-missing-primary-keys --no-interaction"
     run_as "php $occ db:convert-filecache-bigint --no-interaction"
+    echo "Running maintenance:repair, this can take a long time."
+    run_as "php $occ maintenance:repair --include-expensive --no-interaction"
 
     {{- if .Values.scim.token }}
     run_as "php $occ config:app:set scimserviceprovider jwt-secret --value="'"{{ .Values.scim.token }}"'